CRAN Package Check Results for Package iptmnetr

Last updated on 2019-12-05 00:51:57 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.6 2.41 21.62 24.03 OK
r-devel-linux-x86_64-debian-gcc 0.1.6 1.66 17.34 19.00 OK
r-devel-linux-x86_64-fedora-clang 0.1.6 29.87 OK
r-devel-linux-x86_64-fedora-gcc 0.1.6 28.71 OK
r-devel-windows-ix86+x86_64 0.1.6 5.00 49.00 54.00 OK
r-devel-windows-ix86+x86_64-gcc8 0.1.6 6.00 38.00 44.00 ERROR
r-patched-linux-x86_64 0.1.6 1.89 20.18 22.07 OK
r-patched-solaris-x86 0.1.6 40.10 OK
r-release-linux-x86_64 0.1.6 1.95 21.20 23.15 OK
r-release-windows-ix86+x86_64 0.1.6 4.00 37.00 41.00 OK
r-release-osx-x86_64 0.1.6 OK
r-oldrel-windows-ix86+x86_64 0.1.6 2.00 50.00 52.00 OK
r-oldrel-osx-x86_64 0.1.6 OK

Check Details

Version: 0.1.6
Check: examples
Result: ERROR
    Running examples in 'iptmnetr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: search_iptmnet
    > ### Title: Search iPTMNet
    > ### Aliases: search_iptmnet
    >
    > ### ** Examples
    >
    > result <- search_iptmnet(search_term = "smad2",
    + term_type=TermType()$ALL,
    + Role()$EnzymeOrSubstrate,
    + ptm_vector=c(),
    + organism_vector=c())
    No encoding supplied: defaulting to UTF-8.
    Error in read.table(file = file, header = header, sep = sep, quote = quote, :
     no lines available in input
    Calls: search_iptmnet -> .to_dataframe -> <Anonymous> -> read.table
    Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 0.1.6
Check: tests
Result: ERROR
     Running 'testthat.R' [4s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > #option(testthat.default_reporter = "summary")
     > test_check("iptmnetr")
     Loading required package: iptmnetr
     -- 1. Failure: get_info returns valid data (@test_api.R#9) --------------------
     is.null(info) not equal to `F`.
     1 element mismatch
    
     -- 2. Error: search returns valid data (@test_api.R#13) -----------------------
     no lines available in input
     Backtrace:
     1. iptmnetr::search_iptmnet("Smad2", TermType()$ALL, Role()$EnzymeOrSubstrate)
     2. iptmnetr:::.to_dataframe(httr::content(result, "text"))
     3. utils::read.csv(con)
     4. utils::read.table(...)
    
     == testthat results ===========================================================
     [ OK: 7 | SKIPPED: 2 | WARNINGS: 0 | FAILED: 2 ]
     1. Failure: get_info returns valid data (@test_api.R#9)
     2. Error: search returns valid data (@test_api.R#13)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8