Last updated on 2019-12-05 00:51:57 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.6 | 2.41 | 21.62 | 24.03 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.6 | 1.66 | 17.34 | 19.00 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.6 | 29.87 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.6 | 28.71 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.1.6 | 5.00 | 49.00 | 54.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.1.6 | 6.00 | 38.00 | 44.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.6 | 1.89 | 20.18 | 22.07 | OK | |
| r-patched-solaris-x86 | 0.1.6 | 40.10 | OK | |||
| r-release-linux-x86_64 | 0.1.6 | 1.95 | 21.20 | 23.15 | OK | |
| r-release-windows-ix86+x86_64 | 0.1.6 | 4.00 | 37.00 | 41.00 | OK | |
| r-release-osx-x86_64 | 0.1.6 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.6 | 2.00 | 50.00 | 52.00 | OK | |
| r-oldrel-osx-x86_64 | 0.1.6 | OK |
Version: 0.1.6
Check: examples
Result: ERROR
Running examples in 'iptmnetr-Ex.R' failed
The error most likely occurred in:
> ### Name: search_iptmnet
> ### Title: Search iPTMNet
> ### Aliases: search_iptmnet
>
> ### ** Examples
>
> result <- search_iptmnet(search_term = "smad2",
+ term_type=TermType()$ALL,
+ Role()$EnzymeOrSubstrate,
+ ptm_vector=c(),
+ organism_vector=c())
No encoding supplied: defaulting to UTF-8.
Error in read.table(file = file, header = header, sep = sep, quote = quote, :
no lines available in input
Calls: search_iptmnet -> .to_dataframe -> <Anonymous> -> read.table
Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8
Version: 0.1.6
Check: tests
Result: ERROR
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> #option(testthat.default_reporter = "summary")
> test_check("iptmnetr")
Loading required package: iptmnetr
-- 1. Failure: get_info returns valid data (@test_api.R#9) --------------------
is.null(info) not equal to `F`.
1 element mismatch
-- 2. Error: search returns valid data (@test_api.R#13) -----------------------
no lines available in input
Backtrace:
1. iptmnetr::search_iptmnet("Smad2", TermType()$ALL, Role()$EnzymeOrSubstrate)
2. iptmnetr:::.to_dataframe(httr::content(result, "text"))
3. utils::read.csv(con)
4. utils::read.table(...)
== testthat results ===========================================================
[ OK: 7 | SKIPPED: 2 | WARNINGS: 0 | FAILED: 2 ]
1. Failure: get_info returns valid data (@test_api.R#9)
2. Error: search returns valid data (@test_api.R#13)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8