CRAN Package Check Results for Package bigdist

Last updated on 2019-10-21 02:46:25 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.4 1.86 24.18 26.04 OK
r-devel-linux-x86_64-debian-gcc 0.1.4 1.73 19.11 20.84 OK
r-devel-linux-x86_64-fedora-clang 0.1.4 31.89 OK
r-devel-linux-x86_64-fedora-gcc 0.1.4 32.59 OK
r-devel-windows-ix86+x86_64 0.1.4 5.00 37.00 42.00 OK
r-patched-linux-x86_64 0.1.4 1.88 23.36 25.24 OK
r-patched-solaris-x86 0.1.4 43.50 ERROR
r-release-linux-x86_64 0.1.4 2.04 22.98 25.02 OK
r-release-windows-ix86+x86_64 0.1.4 9.00 39.00 48.00 OK
r-release-osx-x86_64 0.1.4 OK
r-oldrel-windows-ix86+x86_64 0.1.4 2.00 37.00 39.00 OK
r-oldrel-osx-x86_64 0.1.4 OK

Check Details

Version: 0.1.4
Check: examples
Result: ERROR
    Running examples in ‘bigdist-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: bigdist
    > ### Title: Read or Create a distance matrix on disk
    > ### Aliases: bigdist
    >
    > ### ** Examples
    >
    > # basics of 'bigdist'
    > # create a random matrix
    > set.seed(1)
    > amat <- matrix(rnorm(1e3), ncol = 10)
    > td <- tempdir()
    >
    > # create a bigdist object with FBM (file-backed matrix) on disk
    > temp <- bigdist(mat = amat, file = file.path(td, "temp_ex1"))
    ----
    Location: /tmp/RtmpwBa4ZT/working_dir/RtmpPmaqg3/temp_ex1_100_float.bk
    Size on disk: 0 GB
    Computing distances ...
    Completed!
    ----
    > temp
    $fbm
    A Filebacked Big Matrix of type 'float' with 100 rows and 100 columns.
    
    attr(,"class")
    [1] "bigdist"
    > temp$fbm$backingfile
    [1] "/tmp/RtmpwBa4ZT/working_dir/RtmpPmaqg3/temp_ex1_100_float.bk"
    > temp$fbm[1, 2]
    [1] 4.631341
    >
    > # connect to FBM on disk as a bigdist object
    > temp2 <- bigdist(file = file.path(td, "temp_ex1_100_float"))
    > temp2
    $fbm
    A Filebacked Big Matrix of type 'float' with 100 rows and 100 columns.
    
    attr(,"class")
    [1] "bigdist"
    > temp2$fbm[1,2]
    
     *** caught segfault ***
    address fc8b0190, cause 'invalid permissions'
    
    Traceback:
     1: extractMat(x$address, i, j)
     2: extract_matrix(x, transform_ind(i, n), transform_ind(j, m))
     3: temp2$fbm[1, 2]
     4: temp2$fbm[1, 2]
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86